PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102453.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 297aa    MW: 33454.8 Da    PI: 10.1274
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102453.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.41.9e-2362142286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++e+l+Li+ ++e++ +++rg lk ++Wee+s  + ++ g+ers++qC++k+e+l+kr+++++++++       s +p+++q+e
  XP_009102453.1  62 WTEDETLLLIDSYKEKWYAVGRGPLKSNQWEEISVSVsARSGVERSATQCRHKMEKLRKRFRAERQSMGPI-----SIWPFYSQME 142
                     ***********************************998899****************************84.....68*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-2062144No hitNo description
PROSITE profilePS500906.6962119IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MATPSPTPSP PPPSDSNPNP PHQNPPPSSS TAIQTPPSPQ TTVVALGAST SAFARKTQPV  60
LWTEDETLLL IDSYKEKWYA VGRGPLKSNQ WEEISVSVSA RSGVERSATQ CRHKMEKLRK  120
RFRAERQSMG PISIWPFYSQ MEELDSNPAP ISARPLTRLP PPTNHYAEDQ YDDEDDDDED  180
ESLNKSRSIN HIVRRPGTVN RFAGVGGGLL QWGQKERSKR KRKDEGSGGE RRMKGARAVA  240
YEIRAFAEKT MLMEKKKMEF AKETAKLRKE MEMKRLKLIQ SSQTQLLQFL NTSFASL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.166110.0flower| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102453.10.0PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLA0A078CJK80.0A0A078CJK8_BRANA; BnaA07g05190D protein
TrEMBLM4DF180.0M4DF18_BRARP; Uncharacterized protein
STRINGBra015090.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-129Trihelix family protein